Stem-loop asu-mir-50

Accession

MI0018548

Description

Ascaris suum asu-mir-50 precursor miRNA

Gene family

MIPF0000266; mir-50

Sequence

ggcguUGAUAUGUCUGGUAUUCUUGGGUUgggucuucgucaaCCAGUAUCUCAGACGUAUCAUCguugugcauug
((((.((((((((((((.((.((..((((((.......)))))))).)).)))))))))))).))))........

Structure

--------    u            U  U  UG      gu 
        ggcg UGAUAUGUCUGG AU CU  GGUUgg  c
        |||| |||||||||||| || ||  ||||||  u
        uugC ACUAUGCAGACU UA GA  CCaacu  u
guuacgug    U            C  U  --      gc 

Annotation confidence Not enough data

Genome context

Unknown

Mature asu-miR-50-5p

• Accession: MIMAT0021461
• Description: Ascaris suum asu-miR-50-5p mature miRNA
• Sequence: 6 - UGAUAUGUCUGGUAUUCUUGGGUU - 29
• Evidence: experimental ; Illumina [1]

Mature asu-miR-50-3p

• Accession: MIMAT0021462
• Description: Ascaris suum asu-miR-50-3p mature miRNA
• Sequence: 43 - CCAGUAUCUCAGACGUAUCAUC - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477