Stem-loop asu-mir-57

Accession

MI0018550

Description

Ascaris suum asu-mir-57 precursor miRNA

Gene family

MIPF0000271; mir-57

Sequence

gugguuucgucUACCCUGUAGUACCGAGCUGUGUUUgagugauuaugcauACACGAUCGGUUGCCGGGUGAAugacgcugccc
(((((.((((.(((((.(((..(((((..(((((.((.((....)).)).))))).)))))))).))))).)))).)))))..

Structure

--     u    c     U   GU     GC     U  a  g 
  guggu ucgu UACCC GUA  ACCGA  UGUGU Ug gu a
  ||||| |||| ||||| |||  |||||  ||||| || ||  
  cgucg aguA GUGGG CGU  UGGCU  GCACA ac ua u
cc     c    A     C   --     -A     u  g  u 

Annotation confidence Not enough data

Genome context

Unknown

Mature asu-miR-57-5p

• Accession: MIMAT0021464
• Description: Ascaris suum asu-miR-57-5p mature miRNA
• Sequence: 12 - UACCCUGUAGUACCGAGCUGUGUUU - 36
• Evidence: experimental ; Illumina [1]

Mature asu-miR-57-3p

• Accession: MIMAT0021465
• Description: Ascaris suum asu-miR-57-3p mature miRNA
• Sequence: 51 - ACACGAUCGGUUGCCGGGUGAA - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477