miRBase entry: asu-mir-71

Stem-loop asu-mir-71


Accession
MI0018551
Description
Ascaris suum asu-mir-71 precursor miRNA
Gene family
MIPF0000278; mir-71

Literature search
1 open access papers mention asu-mir-71
(14 sentences)

Sequence

gggaauguggUGAAAGACAUGGGUAGUGAGACGuuacauugagucgUAUCACUAUUCUGUUUUUCGCCucguauccucg
(((((((.(((((((((((.(((((((((.(((...........))).)))))))))))))))))))).))).))))..

Structure
--    -   u           U         G   uuac 
  ggga aug ggUGAAAGACA GGGUAGUGA ACG    a
  |||| ||| ||||||||||| ||||||||| |||    u
  uccu ugc CCGCUUUUUGU CUUAUCACU Ugc    u
gc    a   u           -         A   ugag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature asu-miR-71-5p

Accession MIMAT0021466
Description Ascaris suum asu-miR-71-5p mature miRNA
Sequence 11 - UGAAAGACAUGGGUAGUGAGACG - 33
Evidence experimental
Illumina [1]

Mature asu-miR-71-3p

Accession MIMAT0021467
Description Ascaris suum asu-miR-71-3p mature miRNA
Sequence 47 - UAUCACUAUUCUGUUUUUCGCC - 68
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21685128
    Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
    "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
    "Genome Res (2011) 21:1462-1477