miRBase entry: asu-mir-86

Stem-loop asu-mir-86


Accession
MI0018558
Description
Ascaris suum asu-mir-86 precursor miRNA
Gene family
MIPF0000247; mir-86


Sequence

ggccaguUAAGUGAAUGCUUUGCCACAGUCUuagcaaugaaauaagCUGGGCUGAGGUUCACUUACGcuggaggcu
..((((((((((((((.(((.(((.(((.((((.........)))))))))).)))))))))))).))))).....

Structure
---gg     -         G   U   A   U    gca 
     ccagu UAAGUGAAU CUU GCC CAG CUua   a
     ||||| ||||||||| ||| ||| ||| ||||   u
     ggucG AUUCACUUG GAG CGG GUC gaau   g
ucgga     C         -   U   -   -    aaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature asu-miR-86-5p

Accession MIMAT0021479
Description Ascaris suum asu-miR-86-5p mature miRNA
Sequence 8 - UAAGUGAAUGCUUUGCCACAGUCU - 31
Evidence experimental
Illumina [1]

Mature asu-miR-86-3p

Accession MIMAT0021480
Description Ascaris suum asu-miR-86-3p mature miRNA
Sequence 47 - CUGGGCUGAGGUUCACUUACG - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21685128
    Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
    "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
    "Genome Res (2011) 21:1462-1477