Stem-loop asu-mir-87a

Accession

MI0018559

Description

Ascaris suum asu-mir-87a precursor miRNA

Gene family

MIPF0000152; mir-87

Literature search

1 open access papers mention asu-mir-87a
(1 sentences)

Sequence

uccgccacuCCGCCUGACACUAGGUCUCAACCUcuguugauuugagcagGUGAGCAAAGUCUCAGGUGUUGuggcgg
.(((((((..(((((((.(((..(.((((...((((((......)))))))))))..))).)))))))..)))))))

Structure

u       uC       C   AG U    ACC      ga 
 ccgccac  CGCCUGA ACU  G CUCA   Ucuguu  u
 |||||||  ||||||| |||  | ||||   ||||||   
 ggcgguG  GUGGACU UGA  C GAGU   Ggacga  u
-       UU       C   AA -    ---      gu 

Annotation confidence Not enough data

Genome context

Unknown

Mature asu-miR-87a-5p

• Accession: MIMAT0021481
• Description: Ascaris suum asu-miR-87a-5p mature miRNA
• Sequence: 10 - CCGCCUGACACUAGGUCUCAACCU - 33
• Evidence: experimental ; Illumina [1]

Mature asu-miR-87a-3p

• Accession: MIMAT0021482
• Description: Ascaris suum asu-miR-87a-3p mature miRNA
• Sequence: 50 - GUGAGCAAAGUCUCAGGUGUUG - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477