Stem-loop asu-mir-87b

Accession

MI0018560

Description

Ascaris suum asu-mir-87b precursor miRNA

Gene family

MIPF0000152; mir-87

Literature search

1 open access papers mention asu-mir-87b
(1 sentences)

Sequence

agagugcucgaCGCCUGGAACUUAGACUCAACCUcaguguaauugcguagGUGAGCAAAGUUUCAGGUGUUCgagcgccuucu
((.((((((((((((((((((((.(.((((.(((..(((....)))..)))))))).)))))))))))).))))))))))...

Structure

---  a        -            A A    A   ca   u 
   ag gugcucga CGCCUGGAACUU G CUCA CCU  gug a
   || |||||||| |||||||||||| | |||| |||  |||  
   uc cgcgagCU GUGGACUUUGAA C GAGU Gga  cgu a
ucu  -        U            A -    -   ug   u 

Annotation confidence Not enough data

Genome context

Unknown

Mature asu-miR-87b-5p

• Accession: MIMAT0021483
• Description: Ascaris suum asu-miR-87b-5p mature miRNA
• Sequence: 12 - CGCCUGGAACUUAGACUCAACCU - 34
• Evidence: experimental ; Illumina [1]

Mature asu-miR-87b-3p

• Accession: MIMAT0021484
• Description: Ascaris suum asu-miR-87b-3p mature miRNA
• Sequence: 51 - GUGAGCAAAGUUUCAGGUGUUC - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477