Stem-loop asu-mir-100a-2

Accession

MI0018563

Description

Ascaris suum asu-mir-100a-2 precursor miRNA

Gene family

MIPF0000033; mir-10

Literature search

1 open access papers mention asu-mir-100a-2
(16 sentences)

Sequence

cgauucauuguguacugaagcaggggugugugcggucAACCCGUAGAUCCGAACUUGUGUUggguuugguaaCAUGAGCUCGGCACUCGGGUAGAcugcgucaucccagcccgccacccaaugcccg
.....(((((.((......((.((((((..(((((((.(((((.((..((((.(((((((((.......))))))))).))))..))))))).))))))).)))))).)).....)).)))))....

Structure

cgauu     u  acugaa  a      ug       A     U  AU    A         gg 
     cauug gu      gc ggggug  ugcgguc ACCCG AG  CCGA CUUGUGUUg  u
     ||||| ||      || ||||||  ||||||| ||||| ||  |||| |||||||||  u
     guaac ca      cg cccuac  gcgucAG UGGGC UC  GGCU GAGUACaau  u
-gccc     c  -ccgcc  a      -u       A     -  AC    C         gg 

Annotation confidence Not enough data

Genome context

Unknown

Mature asu-miR-100a-5p

• Accession: MIMAT0021487
• Description: Ascaris suum asu-miR-100a-5p mature miRNA
• Sequence: 38 - AACCCGUAGAUCCGAACUUGUGUU - 61
• Evidence: experimental ; Illumina [1]

Mature asu-miR-100a-2-3p

• Accession: MIMAT0022835
• Description: Ascaris suum asu-miR-100a-2-3p mature miRNA
• Sequence: 73 - CAUGAGCUCGGCACUCGGGUAGA - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477