Stem-loop asu-mir-100d

Accession

MI0018566

Description

Ascaris suum asu-mir-100d precursor miRNA

Gene family

MIPF0000033; mir-10

Literature search

1 open access papers mention asu-mir-100d
(14 sentences)

Sequence

gaugggcggugAACCCGUAUGCUGUUGGGUGUGUuggguucggugaCACGCUACGGUGUUCGGGUCCaccgaggcguc
((((..(((((.(((((.(((((((..(((((((((.......)))))))))))))))).))))).)))))...))))

Structure

    -gg     A     U       UG         gg 
gaug   cggug ACCCG AUGCUGU  GGUGUGUug  u
||||   ||||| ||||| |||||||  |||||||||  u
cugc   gccaC UGGGC UGUGGCA  UCGCACagu  c
    gga     C     U       --         gg 

Annotation confidence Not enough data

Genome context

Unknown

Mature asu-miR-100d-5p

• Accession: MIMAT0021493
• Description: Ascaris suum asu-miR-100d-5p mature miRNA
• Sequence: 12 - AACCCGUAUGCUGUUGGGUGUGU - 34
• Evidence: experimental ; Illumina [1]

Mature asu-miR-100d-3p

• Accession: MIMAT0021494
• Description: Ascaris suum asu-miR-100d-3p mature miRNA
• Sequence: 47 - CACGCUACGGUGUUCGGGUCC - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477