Stem-loop asu-mir-133

Accession

MI0018568

Description

Ascaris suum asu-mir-133 precursor miRNA

Gene family

MIPF0000029; mir-133

Sequence

ccguucacguaCCUGGUUGUAGCCGAGCCAAAUUGuguuuaguguaucaAUUGGUCCCCUUCAACCAGCUAcgaaaagcg
.((((..((((.(((((((.((..((.((((.(((............)))))))))..)).))))))).))))...))))

Structure

c    -ca    C       U  CC  G    A   uguuu 
 cguu   cgua CUGGUUG AG  GA CCAA UUG     a
 ||||   |||| ||||||| ||  || |||| |||      
 gcga   gcAU GACCAAC UC  CU GGUU Aac     g
-    aaa    C       U  CC  -    -   uaugu 

Annotation confidence Not enough data

Genome context

Unknown

Mature asu-miR-133-5p

• Accession: MIMAT0021497
• Description: Ascaris suum asu-miR-133-5p mature miRNA
• Sequence: 12 - CCUGGUUGUAGCCGAGCCAAAUUG - 35
• Evidence: experimental ; Illumina [1]

Mature asu-miR-133-3p

• Accession: MIMAT0021498
• Description: Ascaris suum asu-miR-133-3p mature miRNA
• Sequence: 50 - AUUGGUCCCCUUCAACCAGCUA - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477