miRBase entry: asu-mir-234

Stem-loop asu-mir-234


Accession
MI0018569
Description
Ascaris suum asu-mir-234 precursor miRNA
Gene family
MIPF0000315; mir-234


Sequence

agcaaaAGGUAUUCUCCGGUAAUGACAuagugcauugaaagcugUUAUUGCUUGAGAAUACAAAUuguuguccggc
(((((...((((((((.((((((((((....((.......)))))))))))).))))))))...))))).......

Structure
-------     aAG        C          uagu  au 
       agcaa   GUAUUCUC GGUAAUGACA    gc  u
       |||||   |||||||| ||||||||||    ||  g
       uuguU   CAUAAGAG UCGUUAUUgu    cg  a
cggccug     AAA        U          ----  aa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature asu-miR-234-5p

Accession MIMAT0021499
Description Ascaris suum asu-miR-234-5p mature miRNA
Sequence 7 - AGGUAUUCUCCGGUAAUGACA - 27
Evidence experimental
Illumina [1]

Mature asu-miR-234-3p

Accession MIMAT0021500
Description Ascaris suum asu-miR-234-3p mature miRNA
Sequence 45 - UUAUUGCUUGAGAAUACAAAU - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21685128
    Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
    "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
    "Genome Res (2011) 21:1462-1477