Stem-loop asu-mir-279a

Accession

MI0018575

Description

Ascaris suum asu-mir-279a precursor miRNA

Gene family

MIPF0000184; mir-279

Literature search

1 open access papers mention asu-mir-279a
(4 sentences)

Sequence

cauugccacauucuuugCUGGGCAUGGCUCUAUGUCAUGcuaucuaguuucaUGACUAGAUCCAUACUCAGCUaggggugug
......(((((((((.((((((.((((.((((.((((((..((...))..)))))))))).)))).)))))).)))))))))

Structure

cauugc         u      C    C    U      cu  c 
      cacauucuu gCUGGG AUGG UCUA GUCAUG  au  
      ||||||||| |||||| |||| |||| ||||||  || u
      gugugggga CGACUC UACC AGAU CAGUac  ug  
------         U      A    U    -      uu  a 

Annotation confidence Not enough data

Genome context

Unknown

Mature asu-miR-279a-5p

• Accession: MIMAT0021511
• Description: Ascaris suum asu-miR-279a-5p mature miRNA
• Sequence: 18 - CUGGGCAUGGCUCUAUGUCAUG - 39
• Evidence: experimental ; Illumina [1]

Mature asu-miR-279a-3p

• Accession: MIMAT0021512
• Description: Ascaris suum asu-miR-279a-3p mature miRNA
• Sequence: 53 - UGACUAGAUCCAUACUCAGCU - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477