Stem-loop asu-mir-279b

Accession

MI0018576

Description

Ascaris suum asu-mir-279b precursor miRNA

Gene family

MIPF0000184; mir-279

Literature search

1 open access papers mention asu-mir-279b
(4 sentences)

Sequence

auucggcgucacuggaACUGGUUUGCAGUCUAGUGCAUgcaauaugaagucaUGACUAGACUGAUAACCAGCUCuaguuucguuc
....((((..((((((.((((((..(((((((((.(((((........).)))))))))))))..)))))).))))))..)))).

Structure

auuc    uc      A      UG         G    - aau 
    ggcg  acugga CUGGUU  CAGUCUAGU CAUg c   a
    ||||  |||||| ||||||  ||||||||| |||| |    
    uugc  ugauCU GACCAA  GUCAGAUCA GUac g   u
---c    uu      C      UA         -    u aag 

Annotation confidence Not enough data

Genome context

Unknown

Mature asu-miR-279b-5p

• Accession: MIMAT0021513
• Description: Ascaris suum asu-miR-279b-5p mature miRNA
• Sequence: 17 - ACUGGUUUGCAGUCUAGUGCAU - 38
• Evidence: experimental ; Illumina [1]

Mature asu-miR-279b-3p

• Accession: MIMAT0021514
• Description: Ascaris suum asu-miR-279b-3p mature miRNA
• Sequence: 53 - UGACUAGACUGAUAACCAGCUC - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477