Stem-loop asu-mir-279c

Accession

MI0018577

Description

Ascaris suum asu-mir-279c precursor miRNA

Gene family

MIPF0000184; mir-279

Literature search

1 open access papers mention asu-mir-279c
(4 sentences)

Sequence

uuacugggcgucacuggaGCUGGCUUACCGUCUAGUGCAUguaaugugaaaucaUGACUAGACUGGUAACCUGCUCuaguuucguuccuu
.....(((((..((((((((.((.((((((((((((.((((...........))))))))))).))))))).))))))))..)))))...

Structure

uuacu     uc        U  C     -       G    uaau 
     gggcg  acuggaGC GG UUACC GUCUAGU CAUg    g
     |||||  |||||||| || ||||| ||||||| ||||    u
     cuugc  ugauCUCG CC AAUGG CAGAUCA GUac    g
--uuc     uu        U  -     U       -    uaaa 

Annotation confidence Not enough data

Genome context

Unknown

Mature asu-miR-279c-5p

• Accession: MIMAT0021515
• Description: Ascaris suum asu-miR-279c-5p mature miRNA
• Sequence: 19 - GCUGGCUUACCGUCUAGUGCAU - 40
• Evidence: experimental ; Illumina [1]

Mature asu-miR-279c-3p

• Accession: MIMAT0021516
• Description: Ascaris suum asu-miR-279c-3p mature miRNA
• Sequence: 55 - UGACUAGACUGGUAACCUGCUC - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477