Stem-loop asu-mir-1175

Accession

MI0018586

Description

Ascaris suum asu-mir-1175 precursor miRNA

Gene family

MIPF0000715; mir-1175

Sequence

gacggucaaaaAAGUGGAGGAUUGGGUCUGCACUgaaugacauggcauagUGAGAUUCUCAUUCCUCCAUUUuagcugccu
...(((....(((((((((((.(((((((.((((..(((......))))))))))..)))).)))))))))))....))).

Structure

gac   caaa           U    --   G    ga   ac 
   ggu    aAAGUGGAGGA UGGG  UCU CACU  aug  a
   |||    ||||||||||| ||||  ||| ||||  |||   
   ccg    uUUUACCUCCU ACUC  AGA GUga  uac  u
--u   ucga           U    UU   -    --   gg 

Annotation confidence Not enough data

Genome context

Unknown

Mature asu-miR-1175-5p

• Accession: MIMAT0021533
• Description: Ascaris suum asu-miR-1175-5p mature miRNA
• Sequence: 12 - AAGUGGAGGAUUGGGUCUGCACU - 34
• Evidence: experimental ; Illumina [1]

Mature asu-miR-1175-3p

• Accession: MIMAT0021534
• Description: Ascaris suum asu-miR-1175-3p mature miRNA
• Sequence: 51 - UGAGAUUCUCAUUCCUCCAUUU - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477