Stem-loop asu-mir-5345a

Accession

MI0018588

Description

Ascaris suum asu-mir-5345a precursor miRNA

Gene family

MIPF0001357; mir-5345

Sequence

gugcgcucaauAAGGCACUGGGUUGGUCAGCUGggguuucuuagcgcaACUGGCCAUUCCAUUGCCUGGUcgagcuguc
....((((.((.(((((.((((.(((((((.((.(.(.....).).)).))))))).)))).))))).)).))))....

Structure

gugc    a  A     C    U       C  g g u 
    gcuc au AGGCA UGGG UGGUCAG UG g u u
    |||| || ||||| |||| ||||||| || | | c
    cgag UG UCCGU ACCU ACCGGUC ac c a u
cugu    c  G     U    U       A  g g u 

Annotation confidence Not enough data

Genome context

Unknown

Mature asu-miR-5345a-5p

• Accession: MIMAT0021537
• Description: Ascaris suum asu-miR-5345a-5p mature miRNA
• Sequence: 12 - AAGGCACUGGGUUGGUCAGCUG - 33
• Evidence: experimental ; Illumina [1]

Mature asu-miR-5345a-3p

• Accession: MIMAT0021538
• Description: Ascaris suum asu-miR-5345a-3p mature miRNA
• Sequence: 49 - ACUGGCCAUUCCAUUGCCUGGU - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477