Stem-loop asu-mir-5345b

Accession

MI0018589

Description

Ascaris suum asu-mir-5345b precursor miRNA

Gene family

MIPF0001357; mir-5345

Sequence

gugugcucaauAAGGCACUGGAUUGGUCAGUUgaguuuucugagcgaaacugggccauuuccauugucuggccgag
.....(((....(((((.((((.(((((((((..((((...))))..)))).)))))..)))).)))))....)))

Structure

gugug   aauA     C    -U     -    ga    u 
     cuc    AGGCA UGGA  UGGUC AGUU  guuu  
     |||    ||||| ||||  ||||| ||||  |||| c
     gag    ucugu accu  accgg ucaa  cgag  
-----   ccgg     u    uu     g    ag    u 

Annotation confidence Not enough data

Genome context

Unknown

Mature asu-miR-5345b

• Accession: MIMAT0021539
• Description: Ascaris suum asu-miR-5345b mature miRNA
• Sequence: 12 - AAGGCACUGGAUUGGUCAGUU - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477