miRBase entry: asu-mir-100e

Stem-loop asu-mir-100e


Accession
MI0018591
Description
Ascaris suum asu-mir-100e precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
1 open access papers mention asu-mir-100e
(14 sentences)

Sequence

ugugugcggugAACCUGAGGACCGUAUGCUGUGUUuggauagguaaCACGCAACGGUGUUCGGGUCCAcuaaagcaucc
...((((((((.(((((((.(((((.(((.(((((.........))))))))))))).))))))).))))...))))..

Structure
ugu    ---    A       G     A   U     ugg 
   gugc   ggug ACCUGAG ACCGU UGC GUGUU   a
   ||||   |||| ||||||| ||||| ||| |||||   u
   uacg   ucAC UGGGCUU UGGCA ACG CACaa   a
-cc    aaa    C       G     -   -     ugg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature asu-miR-100e-5p

Accession MIMAT0021542
Description Ascaris suum asu-miR-100e-5p mature miRNA
Sequence 12 - AACCUGAGGACCGUAUGCUGUGUU - 35
Evidence experimental
Illumina [1]

Mature asu-miR-100e-3p

Accession MIMAT0021543
Description Ascaris suum asu-miR-100e-3p mature miRNA
Sequence 47 - CACGCAACGGUGUUCGGGUCCA - 68
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21685128
    Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
    "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
    "Genome Res (2011) 21:1462-1477