miRBase entry: asu-mir-5349

Stem-loop asu-mir-5349


Accession
MI0018595
Description
Ascaris suum asu-mir-5349 precursor miRNA


Sequence

ucgucuugggCUGCUCUCGGAUGAGCCAGCUUgagaauucagaaaUCUGGCACACCCGGUGGCAUUCuauccggcaauau
..(((.((((.((((.((((.((.(((((.((((....))))....))))).)).)))).)))).))))...))).....

Structure
---uc   --u    C    C    A  A     ---C    g 
     guc   uggg UGCU UCGG UG GCCAG    UUga a
     |||   |||| |||| |||| || |||||    ||||  
     cgg   auCU ACGG GGCC AC CGGUC    gacu a
uauaa   ccu    U    U    C  A     Uaaa    u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature asu-miR-5349-5p

Accession MIMAT0021550
Description Ascaris suum asu-miR-5349-5p mature miRNA
Sequence 11 - CUGCUCUCGGAUGAGCCAGCUU - 32
Evidence experimental
Illumina [1]

Mature asu-miR-5349-3p

Accession MIMAT0021551
Description Ascaris suum asu-miR-5349-3p mature miRNA
Sequence 46 - UCUGGCACACCCGGUGGCAUUC - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21685128
    Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
    "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
    "Genome Res (2011) 21:1462-1477