miRBase entry: asu-mir-5350b

Stem-loop asu-mir-5350b


Accession
MI0018597
Description
Ascaris suum asu-mir-5350b precursor miRNA
Gene family
MIPF0001367; mir-5350


Sequence

ugcaggagguggCGUUUCUAAGGUCUGCCAAAUUgucugaucgcaaaUUUGGCACACCUAAGGAGCACUcguuccc
....((((..((.((((((.((((.(((((((((((......)).))))))))).)))).)))))).))..)))).

Structure
ugca    gu  C      A    C         -  cu 
    ggag  gg GUUUCU AGGU UGCCAAAUU gu  g
    ||||  || |||||| |||| ||||||||| ||   
    ccuu  UC CGAGGA UCCA ACGGUUUaa cg  a
---c    gc  A      A    C         a  cu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature asu-miR-5350b-5p

Accession MIMAT0021554
Description Ascaris suum asu-miR-5350b-5p mature miRNA
Sequence 13 - CGUUUCUAAGGUCUGCCAAAUU - 34
Evidence experimental
Illumina [1]

Mature asu-miR-5350b-3p

Accession MIMAT0021555
Description Ascaris suum asu-miR-5350b-3p mature miRNA
Sequence 48 - UUUGGCACACCUAAGGAGCACU - 69
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21685128
    Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
    "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
    "Genome Res (2011) 21:1462-1477