Stem-loop asu-mir-5350d

Accession

MI0018599

Description

Ascaris suum asu-mir-5350d precursor miRNA

Sequence

cggcggCCUUUCUCGGGUAAGCUAAAUUguuuuugugcgaaaUUUGGCACGCCCGUGGAAUGCCcauugcaguau
..(((((.((((.(((((..((((((((((......))))..))))))..))))).)))).)))....)).....

Structure

---cg  ----   C    U     AA      --    uu 
     gc    ggC UUUC CGGGU  GCUAAA  UUgu  u
     ||    ||| |||| |||||  ||||||  ||||   
     cg    CCG AAGG GCCCG  CGGUUU  agcg  u
uauga  uuac   U    U     CA      aa    ug 

Annotation confidence Not enough data

Genome context

Unknown

Mature asu-miR-5350d-5p

• Accession: MIMAT0021558
• Description: Ascaris suum asu-miR-5350d-5p mature miRNA
• Sequence: 7 - CCUUUCUCGGGUAAGCUAAAUU - 28
• Evidence: experimental ; Illumina [1]

Mature asu-miR-5350d-3p

• Accession: MIMAT0021559
• Description: Ascaris suum asu-miR-5350d-3p mature miRNA
• Sequence: 43 - UUUGGCACGCCCGUGGAAUGCC - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477