miRBase entry: asu-mir-5352

Stem-loop asu-mir-5352


Accession
MI0018601
Description
Ascaris suum asu-mir-5352 precursor miRNA


Sequence

aagucccucagAAGGCGCUCAGAAUGUGCAUCGuaguuacugaaucgUUGCACAUGUUGAACGACCUGCUgggugccuc
..((.((.(((.(((((.((((.(((((((.((............)).))))))).)))).)).))).))))).))...

Structure
-aa  c  u   A   -  C    A       U  uaguu 
   gu cc cag AGG CG UCAG AUGUGCA CG     a
   || || ||| ||| || |||| ||||||| ||      
   cg gg gUC UCC GC AGUU UACACGU gc     c
cuc  u  -   G   A  A    G       U  uaagu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature asu-miR-5352-5p

Accession MIMAT0021562
Description Ascaris suum asu-miR-5352-5p mature miRNA
Sequence 12 - AAGGCGCUCAGAAUGUGCAUCG - 33
Evidence experimental
Illumina [1]

Mature asu-miR-5352-3p

Accession MIMAT0021563
Description Ascaris suum asu-miR-5352-3p mature miRNA
Sequence 48 - UUGCACAUGUUGAACGACCUGCU - 70
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21685128
    Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
    "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
    "Genome Res (2011) 21:1462-1477