miRBase entry: asu-mir-5358a

Stem-loop asu-mir-5358a


Accession
MI0018609
Description
Ascaris suum asu-mir-5358a precursor miRNA


Sequence

ggugugggaggCGGUUAUGGUAUUGCGCUGGUAUGuugauucuguguucaUACCCGUAAUUGCCAUGACUGUUucccgcucc
((.((((((((((((((((((((((((..((((((.............))))))))))).))))))))))))))))))).))

Structure
  u                   -     CU      uugau 
gg gugggaggCGGUUAUGGUA UUGCG  GGUAUG     u
|| ||||||||||||||||||| |||||  ||||||     c
cc cgcccuUUGUCAGUACCGU AAUGC  CCAUac     u
  u                   U     --      uugug 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature asu-miR-5358a-5p

Accession MIMAT0021578
Description Ascaris suum asu-miR-5358a-5p mature miRNA
Sequence 12 - CGGUUAUGGUAUUGCGCUGGUAUG - 35
Evidence experimental
Illumina [1]

Mature asu-miR-5358a-3p

Accession MIMAT0021579
Description Ascaris suum asu-miR-5358a-3p mature miRNA
Sequence 51 - UACCCGUAAUUGCCAUGACUGUU - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21685128
    Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
    "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
    "Genome Res (2011) 21:1462-1477