miRBase entry: asu-mir-5362

Stem-loop asu-mir-5362


Accession
MI0018613
Description
Ascaris suum asu-mir-5362 precursor miRNA


Sequence

ugugcaguuAAAUCUCGUCCGGUAGUAUAUGCgaguugaaaagcAUUGCAACCGGUGGAGAUUCCAcugacuucucu
.((.((((..((((((..(((((.(((.((((..........))))))).)))))..))))))..))))))......

Structure
-----u  g    uA      GU     A   U    gagu 
      gu cagu  AAUCUC  CCGGU GUA AUGC    u
      || ||||  ||||||  ||||| ||| ||||     
      ca gucA  UUAGAG  GGCCA CGU UAcg    g
ucucuu  -    CC      GU     A   -    aaaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature asu-miR-5362-5p

Accession MIMAT0021586
Description Ascaris suum asu-miR-5362-5p mature miRNA
Sequence 10 - AAAUCUCGUCCGGUAGUAUAUGC - 32
Evidence experimental
Illumina [1]

Mature asu-miR-5362-3p

Accession MIMAT0021587
Description Ascaris suum asu-miR-5362-3p mature miRNA
Sequence 45 - AUUGCAACCGGUGGAGAUUCCA - 66
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21685128
    Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
    "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
    "Genome Res (2011) 21:1462-1477