Stem-loop asu-mir-5365b

Accession

MI0018618

Description

Ascaris suum asu-mir-5365b precursor miRNA

Gene family

MIPF0001363; mir-5365

Sequence

aagcaucagcuagauCAGCUGUUCCAUCUUAAUCAUaaaauucaauucaggaUGAUUAAGAAGAAACAACUGAUuuacugagugcau
..(((((((.((((((((.((((.(.((((((((((...............)))))))))).).)))).)))))))))))).)))..

Structure

aa   -    c        C    C A          aaaauu 
  gca ucag uagauCAG UGUU C UCUUAAUCAU      c
  ||| |||| |||||||| |||| | ||||||||||      a
  cgu aguc auuUAGUC ACAA G AGAAUUAGUa      a
ua   g    -        A    A A          ggacuu 

Annotation confidence Not enough data

Genome context

Unknown

Mature asu-miR-5365b-5p

• Accession: MIMAT0021596
• Description: Ascaris suum asu-miR-5365b-5p mature miRNA
• Sequence: 16 - CAGCUGUUCCAUCUUAAUCAU - 36
• Evidence: experimental ; Illumina [1]

Mature asu-miR-5365b-3p

• Accession: MIMAT0021597
• Description: Ascaris suum asu-miR-5365b-3p mature miRNA
• Sequence: 53 - UGAUUAAGAAGAAACAACUGAU - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477