miRBase entry: asu-mir-5358b

Stem-loop asu-mir-5358b


Accession
MI0018619
Description
Ascaris suum asu-mir-5358b precursor miRNA


Sequence

ugucggcaaCCAUGUUGGUGCGUCGUGGUAUGcugaugguguauucaUACCCGUAAUGCCAACAUGCAUgcuugcac
(((.((((..((((((((((...((.((((((..((((...))))))))))))...))))))))))..)))).))).

Structure
-   c    aC          CGU  U      cu    g 
 ugu ggca  CAUGUUGGUG   CG GGUAUG  gaug  
 ||| ||||  ||||||||||   || ||||||  |||| u
 acg ucgU  GUACAACCGU   GC CCAUac  uuau  
c   u    AC          AAU  -      --    g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature asu-miR-5358b-5p

Accession MIMAT0021598
Description Ascaris suum asu-miR-5358b-5p mature miRNA
Sequence 10 - CCAUGUUGGUGCGUCGUGGUAUG - 32
Evidence experimental
Illumina [1]

Mature asu-miR-5358b-3p

Accession MIMAT0021599
Description Ascaris suum asu-miR-5358b-3p mature miRNA
Sequence 48 - UACCCGUAAUGCCAACAUGCAU - 69
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21685128
    Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
    "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
    "Genome Res (2011) 21:1462-1477