Stem-loop gma-MIR395a

Accession

MI0018642

Description

Glycine max gma-MIR395a precursor miRNA

Gene family

MIPF0000016; MIR395

Literature search

15 open access papers mention gma-MIR395a
(74 sentences)

Sequence

ucagguuuucccuagaguuccccugaacgcuucauuaaagggcuuuauuaucauauagucccaaguuaguccauaCUGAAGUGUUUGGGGGAACUCccggugauacuuga
((((((..((((..((((((((((((((((((((.((..(((((.......................))))).)).))))))))))))))))))))..)).)).))))))

Structure

      uu  -  ua                    u  aa     uuauuaucau 
ucaggu  uc cc  gaguuccccugaacgcuuca ua  gggcu          a
||||||  || ||  |||||||||||||||||||| ||  |||||          u
aguuca  ag gg  CUCAAGGGGGUUUGUGAAGU au  ccuga          a
      -u  u  cc                    C  -a     uugaacccug 

Annotation confidence Not enough data

Genome context

chr1: 4840520-4840629 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from gma-MIR395a

Mature gma-miR395a

• Accession: MIMAT0021624
• Description: Glycine max gma-miR395a mature miRNA
• Sequence: 76 - CUGAAGUGUUUGGGGGAACUC - 96
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307