Stem-loop gma-MIR156j

Accession

MI0018651

Description

Glycine max gma-MIR156j precursor miRNA

Literature search

39 open access papers mention gma-MIR156j
(157 sentences)

Sequence

326563 reads, 847.0 reads per million, 178 experiments

ggugaugcugUUGACAGAAGAUAGAGAGCACagaugaugaaaugcaagaaaggaaauggcaucuuacucuuuuguGCUCUCUAGUCUUCUUGUCAUCAucauu
.((((((....(((((((((((((((((((((((.(((((.((((.............)))).))).)).)))))))))))).)))))).))))).)))))).

Structure

g      cugU     -      -            u  -   a    aagaa 
 gugaug    UGACA GAAGAU AGAGAGCACaga ga uga augc     a
 ||||||    ||||| |||||| |||||||||||| || ||| ||||     g
 uacuAC    ACUGU CUUCUG UCUCUCGuguuu cu auu uacg     g
u      ---U     U      A            u  c   c    guaaa 

Annotation confidence High

Genome context

chr2: 7901956-7902058 [+]

Mature gma-miR156j-5p

• Accession: MIMAT0021634
• Description: Glycine max gma-miR156j-5p mature miRNA
• Sequence: 11 - UUGACAGAAGAUAGAGAGCAC - 31
• Evidence: experimental ; Illumina [1]

Mature gma-miR156j-3p

• Accession: MIMAT0054242
• Description: Glycine max gma-miR156j-3p mature miRNA
• Sequence: 76 - GCUCUCUAGUCUUCUUGUCAUCA - 98
• Evidence: experimental ; unknown

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307