miRBase entry: gma-MIR156k

Stem-loop gma-MIR156k


Accession
MI0018652
Description
Glycine max gma-MIR156k precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
40 open access papers mention gma-MIR156k
(164 sentences)

Sequence

gaaaUUGACAGAAGAGAGUGAGCACacagaggcacuugguauaguauauauacuauugcuuuugcgugcucacuucucuuucugucaacuuc
(((.(((((((((((((((((((((.((((((((..(((((((.....))))))).)))))))).)))))))).)))).))))))))).)))

Structure
   a         -    -        a        cu       g 
gaa UUGACAGAA GAGA GUGAGCAC cagaggca  ugguaua u
||| ||||||||| |||| |||||||| ||||||||  ||||||| a
cuu aacugucuu cucu cacucgug guuuucgu  aucauau u
   c         u    u        c        -u       a 


Annotation confidence Not enough data
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Genome context
chr6: 4705086-4705177 [-]

Database links

Mature gma-miR156k

Accession MIMAT0021635
Description Glycine max gma-miR156k mature miRNA
Sequence 5 - UUGACAGAAGAGAGUGAGCAC - 25
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 21663675
    Identification of novel soybean microRNAs involved in abiotic and biotic stresses
    Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
    BMC Genomics (2011) 12:307

  2. PubMed ID: 24475082
    Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
    Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
    PLoS One (2014) 9:e86153