Stem-loop sequence gma-MIR159e

Accession

MI0018657 (change log)

Description

Glycine max miR159e stem-loop

Gene family

MIPF0000010; MIR159

Literature search

23 open access papers mention gma-MIR159e
(91 sentences)

Stem-loop

   -         -uuau  a            ga       uu      cu    ----   ug   u     g     c      uc      uu     -  ucauua 
5'  caaaggggg     gg guggagcuccuu  aguccaa  gaggau  uacu    ggg  gau gagcu cuuag uaugga  ccacag  cuacc ca      a
    |||||||||     || ||||||||||||  |||||||  ||||||  ||||    |||  ||| ||||| ||||| ||||||  ||||||  ||||| ||       
3'  guuuucccc     cc caucucgaggga  uuagguu  uuccua  auga    ucc  uua uucga ggguc auaccu  gguguu  gaugg gu      g
   u         ucuuc  a            ag       uc      uu    uauu   gu   c     g     u      uc      cu     u  uuucgu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr7: 9561934-9562144 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018657

Mature sequence gma-miR159e-5p

• Accession: MIMAT0021640
• Sequence: 20 - gagcuccuugaaguccaauu - 39
• Evidence: experimental; Illumina [1]

Mature sequence gma-miR159e-3p

• Accession: MIMAT0021641
• Sequence: 172 - uuuggauugaagggagcucua - 192
• Evidence: experimental; Illumina [1]

References

1. PMID:21663675 "Identification of novel soybean microRNAs involved in abiotic and biotic stresses" Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R BMC Genomics. 12:307(2011).