miRBase entry: gma-MIR169m

Stem-loop gma-MIR169m


Accession
MI0018665
Description
Glycine max gma-MIR169m precursor miRNA
Gene family
MIPF0000037; MIR169_2

Literature search
24 open access papers mention gma-MIR169m
(99 sentences)

Sequence

gaaaguagagugCAGCCAAGGAUGACUUGCCGGagcaauaagcaauaauaucuaucuauuuuaucuuucuuuucuucuuauucuuucacgccggcaaguuguucuuggcuacauuuuguuuuc
((((((((((((.((((((((((((((((((((......(((.(((((.............................)))))))).....)))))))))))))))))))).))))))))))))

Structure
            C                    agcaau   c     uaucuaucuauuu 
gaaaguagagug AGCCAAGGAUGACUUGCCGG      aag aauaa             u
|||||||||||| ||||||||||||||||||||      ||| |||||             a
cuuuuguuuuac ucgguucuuguugaacggcc      uuc uuauu             u
            a                    -gcacu   -     cuucuuuucuuuc 


Annotation confidence Not enough data
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Genome context
chr13: 21492366-21492488 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gma-MIR169m
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gma-miR169m

Accession MIMAT0021653
Description Glycine max gma-miR169m mature miRNA
Sequence 13 - CAGCCAAGGAUGACUUGCCGG - 33
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21663675
    Identification of novel soybean microRNAs involved in abiotic and biotic stresses
    Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
    BMC Genomics (2011) 12:307