miRBase entry: gma-MIR169n

Stem-loop gma-MIR169n


Accession
MI0018666
Description
Glycine max gma-MIR169n precursor miRNA
Gene family
MIPF0000037; MIR169_2

Literature search
23 open access papers mention gma-MIR169n
(99 sentences)

Sequence

ggagugCAGCCAAGGGUGAUUUGCCGGcacaggcacuaauuaguucaauauugaauaguuaguucuguuugauugauuuacuucugUGCCGGCAAGUUUCUCUUGGCuacauuuc
((((((.(((((((((.((((((((((((((((....((((((((.((((..((((.....)))))))).))))))))....)))))))))))))))).))))))))).))))))

Structure
      C         U                cacu        c    uu    a 
ggagug AGCCAAGGG GAUUUGCCGGcacagg    aauuaguu aaua  gaau g
|||||| ||||||||| ||||||||||||||||    |||||||| ||||  |||| u
cuuuac uCGGUUCUC UUGAACGGCCGUgucu    uuaguuag uugu  cuug u
      a         U                ucau        u    --    a 


Annotation confidence Not enough data
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Genome context
chr15: 14166062-14166176 [+]

Database links

Mature gma-miR169n-5p

Accession MIMAT0021654
Description Glycine max gma-miR169n-5p mature miRNA
Sequence 7 - CAGCCAAGGGUGAUUUGCCGG - 27
Evidence experimental
Illumina [1]

Mature gma-miR169n-3p

Accession MIMAT0032126
Description Glycine max gma-miR169n-3p mature miRNA
Sequence 87 - UGCCGGCAAGUUUCUCUUGGC - 107
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 21663675
    Identification of novel soybean microRNAs involved in abiotic and biotic stresses
    Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
    BMC Genomics (2011) 12:307

  2. PubMed ID: 24475082
    Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
    Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
    PLoS One (2014) 9:e86153