Stem-loop gma-MIR172h

Accession

MI0018669

Description

Glycine max gma-MIR172h precursor miRNA

Gene family

MIPF0000035; MIR172

Literature search

27 open access papers mention gma-MIR172h
(126 sentences)

Sequence

gcagguGCAGCAGCAUCAAGAUUCACAcacagauuuaccuccuugggggcguguguuucggugcugAGAAUCUUGAUGAUGCUGCAUcagc
((.(((((((((.(((((((((((.(((((.((..(((((((...)))).)))....)).))).)).))))))))))).))))))))).))

Structure

  a         G           A  -   a  --uu   -    u 
gc gguGCAGCA CAUCAAGAUUC CA cac ga    uac cucc  
|| ||||||||| ||||||||||| || ||| ||    ||| |||| u
cg cUACGUCGU GUAGUUCUAAG gu gug cu    gug gggg  
  a         A           A  c   g  uugu   c    g 

Annotation confidence Not enough data

Genome context

chr10: 44054389-44054479 [+]

Mature gma-miR172h-5p

• Accession: MIMAT0021657
• Description: Glycine max gma-miR172h-5p mature miRNA
• Sequence: 7 - GCAGCAGCAUCAAGAUUCACA - 27
• Evidence: experimental ; Illumina [1]

Mature gma-miR172h-3p

• Accession: MIMAT0021658
• Description: Glycine max gma-miR172h-3p mature miRNA
• Sequence: 67 - AGAAUCUUGAUGAUGCUGCAU - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307