Stem-loop gma-MIR172j

Accession

MI0018671

Description

Glycine max gma-MIR172j precursor miRNA

Gene family

MIPF0000035; MIR172

Literature search

27 open access papers mention gma-MIR172j
(123 sentences)

Sequence

gcagguGCAGCAGCAUCAAGAUUCACAcacagauuccaccuccuugggggaguguuuaggugcugagaaucuugaugaugcugcaucagc
((.(((((((((.(((((((((((.((((((.(((((.(((....)))))))).)....))).)).))))))))))).))))))))).))

Structure

  a         G           A  -   ---- g     a   c 
gc gguGCAGCA CAUCAAGAUUC CA cac    a auucc ccu c
|| ||||||||| ||||||||||| || |||    | ||||| |||  
cg cuacgucgu guaguucuaag gu gug    u ugagg ggg u
  a         a           a  c   gauu g     -   u 

Annotation confidence Not enough data

Genome context

chr20: 42009499-42009588 [-]

Mature gma-miR172j

• Accession: MIMAT0021660
• Description: Glycine max gma-miR172j mature miRNA
• Sequence: 7 - GCAGCAGCAUCAAGAUUCACA - 27
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307