Stem-loop gma-MIR319i

Accession

MI0018674

Description

Glycine max gma-MIR319i precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

17 open access papers mention gma-MIR319i
(42 sentences)

Sequence

aagagagugaaggagcuuccuucagcccacgcauggguucgggggauugaaggguugcugaagcaucugcugacucauucauacacacagaauagugauucaaauugcuaagguaauugugugaaugaagcaggagauauuuugcaucccucuuucuuugugcUUGGACUGAAGGGGAGCUCCUUCuuucuguu
((.((((.(((((((((((((((((.(((.((((.......(((((..((.(((.(((.((((.((((.(((..(((((((((((.......(((((((....))))))).......)))))))))))..))).)))).))))))).)))))..))))))))).))).))))).)))))))))))).)))).))

Structure

  g    u            -     c   c    ggguucg     uu  a   u   u    c    g   ac           cacagaa       u 
aa agag gaaggagcuucc uucag cca gcau       gggga  ga ggg ugc gaag aucu cug  ucauucauaca       uagugau c
|| |||| |||||||||||| ||||| ||| ||||       |||||  || ||| ||| |||| |||| |||  |||||||||||       |||||||  
uu ucuu CUUCCUCGAGGG AAGUC GGU cgug       uuucu  cu ccc acg uuuu uaga gac  aguaagugugu       aucguua a
  g    u            G     A   U    -------     uu  -   u   -    a    g   ga           uaaugga       a 

Annotation confidence Not enough data

Genome context

chr4: 49476554-49476747 [+]

Mature gma-miR319i

• Accession: MIMAT0021663
• Description: Glycine max gma-miR319i mature miRNA
• Sequence: 164 - UUGGACUGAAGGGGAGCUCCUUC - 186
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307


2. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153