miRBase entry: gma-MIR396h

Stem-loop gma-MIR396h


Accession
MI0018679
Description
Glycine max gma-MIR396h precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
25 open access papers mention gma-MIR396h
(144 sentences)

Sequence

gaauggucuuuuucgugaucuUCCACAGCUUUCUUGAACUGuguugugugagguuucuccaagugaagguuuaagaucccuuaugcaacauaaauucuuugagcacaauucaagauagcuguggaaaaucacugagaugaucucguuc
((((((((.((((.(((((.((((((((((.(((((((.((((((((((((((..(((((.......))....)))..)))))))))...............))))).))))))).)))))))))).))))).)))).))))..))))

Structure
    --    u    c     c          U       C     ---------------         uu   ----  aa 
gaau  gguc uuuu gugau uUCCACAGCU UCUUGAA UGugu               ugugugagg  ucu    cc  g
||||  |||| |||| ||||| |||||||||| ||||||| |||||               |||||||||  |||    ||  u
cuug  cuag agag cacua aaggugucga agaacuu acacg               acguauucc  aga    gg  g
    cu    u    u     a          u       a     aguuucuuaaauaca         cu   auuu  aa 


Annotation confidence Not enough data
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Genome context
chr14: 13772743-13772890 [+]

Database links

Mature gma-miR396h

Accession MIMAT0021668
Description Glycine max gma-miR396h mature miRNA
Sequence 22 - UCCACAGCUUUCUUGAACUG - 41
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 21663675
    Identification of novel soybean microRNAs involved in abiotic and biotic stresses
    Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
    BMC Genomics (2011) 12:307

  2. PubMed ID: 24475082
    Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
    Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
    PLoS One (2014) 9:e86153