miRBase entry: sbi-MIR5384

Stem-loop sbi-MIR5384


Accession
MI0018691
Description
Sorghum bicolor sbi-MIR5384 precursor miRNA

Literature search
1 open access papers mention sbi-MIR5384
(1 sentences)

Sequence

ggggaaccaggaagcggcgccgccgccgggcccuuggccggugcacgcguccacccgaggguugggCGCGCCGCCGUCCAGCGGcuccgugacggcgccaaaaccggugc
.....(((.((....(((((((.(((.(((((.((((.(((((..((((((((((....)).)))))))).))))).)))).))))).))).)))))))....)))))..

Structure
gggga   a  aagc       c   c     c    c     ca        -  c 
     acc gg    ggcgccg cgc gggcc uugg cggug  cgcgucca cc g
     ||| ||    ||||||| ||| ||||| |||| |||||  |||||||| ||  
     ugg cc    ccgcggc gug cucGG GACC GCCGC  GCGCgggu gg a
---cg   -  aaaa       a   c     C    U     -C        u  g 


Annotation confidence Not enough data
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Genome context
chr4: 46382362-46382471 [+]

Database links

Mature sbi-miR5384

Accession MIMAT0021682
Description Sorghum bicolor sbi-miR5384 mature miRNA
Sequence 67 - CGCGCCGCCGUCCAGCGG - 84
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21740560
    Characterization of the small RNA component of the transcriptome from grain and sweet sorghum stems
    Calviño M, Bruggmann R, Messing J
    BMC Genomics (2011) 12:356