Stem-loop aca-let-7c-1

Accession

MI0018703

Description

Anolis carolinensis aca-let-7c-1 precursor miRNA

Gene family

MIPF0000002; let-7

Literature search

1 open access papers mention aca-let-7c-1
(1 sentences)

Sequence

gugugcauccggguUGAGGUAGUAGGUUGUAUGGUUuagaguuacacccugggaguuaaCUGUACAACCUUCUAGCUUUCCuuggagcacacuugaac
((((((.((((((..(((.(((.(((((((((((((..((.(..((...))..).))))))))))))))).))).)))..))))))))))))......

Structure

------      a      uU   G   U             ua  g ua  c 
      gugugc uccggg  GAG UAG AGGUUGUAUGGUU  ga u  ca  
      |||||| ||||||  ||| ||| |||||||||||||  || |  || c
      cacacg agguuC  UUC AUC UCCAACAUGUCaa  uu a  gu  
caaguu      -      CU   G   U             --  g gg  c 

Annotation confidence Not enough data

Genome context

chr3: 154032171-154032268 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-let-7c-1

Mature aca-let-7c-5p

• Accession: MIMAT0021696
• Description: Anolis carolinensis aca-let-7c-5p mature miRNA
• Sequence: 15 - UGAGGUAGUAGGUUGUAUGGUU - 36
• Evidence: experimental ; Illumina [1]

Mature aca-let-7c-1-3p

• Accession: MIMAT0021697
• Description: Anolis carolinensis aca-let-7c-1-3p mature miRNA
• Sequence: 60 - CUGUACAACCUUCUAGCUUUCC - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107