miRBase entry: aca-mir-100

Stem-loop aca-mir-100


Accession
MI0018711
Description
Anolis carolinensis aca-mir-100 precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

cuuccugcuaguugccacaAACCCGUAGAUCCGAACUUGUGcuucuauguuacacaagcuugugucuauagguaugugucugcuuggccaauuca
......((((((.(.((((.(((.((((((.(((.((((((...........)))))).))).)))))).))).)))).).)).)))).......

Structure
-cuuccu    -  u c    A   C      C   A      cuuc 
       gcua gu g caca ACC GUAGAU CGA CUUGUG    u
       |||| || | |||| ||| |||||| ||| ||||||    a
       cggu cg c gugu ugg uaucug guu gaacac    u
acuuaac    u  u u    a   a      u   c      auug 


Annotation confidence Not enough data
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Genome context
CM000943.1: 2624853-2624947 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from aca-mir-100
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-miR-100

Accession MIMAT0021709
Description Anolis carolinensis aca-miR-100 mature miRNA
Sequence 20 - AACCCGUAGAUCCGAACUUGUG - 41
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107