miRBase entry: aca-mir-125a

Stem-loop aca-mir-125a


Accession
MI0018724
Description
Anolis carolinensis aca-mir-125a precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

gggcaucuucucugUCCCUGAGACCCUUAACCUGUGaggaagcccagaggucACAGGUGAGGUUCUUGGGAACUgagcggagagccaccc
.(((.(((.(((.((.(((((((.(((((.(((((((((....)).....)))))))))))).))))))).)).))).)))..)))....

Structure
---g   -a   u   u  C       C     A       -----  a 
    ggc  ucu cuc gU CCUGAGA CCUUA CCUGUGa     gg a
    |||  ||| ||| || ||||||| ||||| |||||||     ||  
    ccg  agg gag CA GGGUUCU GGAGU GGACAcu     cc g
ccca   ag   c   U  A       U     -       ggaga  c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
GL343604.1: 274383-274472 [+]

Database links

Mature aca-miR-125a-5p

Accession MIMAT0021727
Description Anolis carolinensis aca-miR-125a-5p mature miRNA
Sequence 15 - UCCCUGAGACCCUUAACCUGUG - 36
Evidence experimental
Illumina [1]

Mature aca-miR-125a-3p

Accession MIMAT0021728
Description Anolis carolinensis aca-miR-125a-3p mature miRNA
Sequence 53 - ACAGGUGAGGUUCUUGGGAACU - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107