miRBase entry: aca-mir-129b

Stem-loop aca-mir-129b


Accession
MI0018731
Description
Anolis carolinensis aca-mir-129b precursor miRNA
Gene family
MIPF0000073; mir-129


Sequence

cagggucuucccuggguCUUUUUGCGGUCUGGGCUUUcugggucuguccaacccccguaucagaAAGCCCUUACCCCAAAAAGCAuccggggcuggacgagggcaucgccgcga
....((((.(((((((((((((((.(((..(((((((((((..(.(........).)..)))))))))))..))).))))))).))))))))..))))...(((...)))....

Structure
------------cagg    -u        -       C   CU           gu u ucc 
                gucu  cccugggu CUUUUUG GGU  GGGCUUUcugg  c g   a
                ||||  |||||||| ||||||| |||  |||||||||||  | |    
                cagg  ggggccuA GAAAAAC CCA  CCCGAAagacu  g c   a
agcgccgcuacgggag    uc        C       C   UU           au c ccc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr6: 79191950-79192063 [-]

Database links

Mature aca-miR-129b-5p

Accession MIMAT0021736
Description Anolis carolinensis aca-miR-129b-5p mature miRNA
Sequence 18 - CUUUUUGCGGUCUGGGCUUU - 37
Evidence experimental
Illumina [1]

Mature aca-miR-129b-3p

Accession MIMAT0021737
Description Anolis carolinensis aca-miR-129b-3p mature miRNA
Sequence 65 - AAGCCCUUACCCCAAAAAGCA - 85
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107