Stem-loop aca-mir-130a-1

Accession

MI0018733

Description

Anolis carolinensis aca-mir-130a-1 precursor miRNA

Gene family

MIPF0000034; mir-130

Sequence

ugcauggccccuguccaagGCUCUUUUCACAUUGUGCUUCugucugugcccgacccaagCAGUGCAAUGUUAAAAGGGCAuuggguggguggcugc
.....(((((((((((((.((((((((.((((((((((.(((((.......)))...)).)))))))))).)))))))).))))))))).))))..

Structure

ugcau    -         g        C          U  ---   ug 
     ggcc ccuguccaa GCUCUUUU ACAUUGUGCU Cu   guc  u
     |||| ||||||||| |||||||| |||||||||| ||   |||  g
     ucgg ggguggguu CGGGAAAA UGUAACGUGA ga   cag  c
---cg    u         A        U          C  acc   cc 

Annotation confidence Not enough data

Genome context

chr1: 91616105-91616200 [-]

Mature aca-miR-130a-1-5p

• Accession: MIMAT0021739
• Description: Anolis carolinensis aca-miR-130a-1-5p mature miRNA
• Sequence: 20 - GCUCUUUUCACAUUGUGCUUC - 40
• Evidence: experimental ; Illumina [1]

Mature aca-miR-130a-3p

• Accession: MIMAT0021740
• Description: Anolis carolinensis aca-miR-130a-3p mature miRNA
• Sequence: 60 - CAGUGCAAUGUUAAAAGGGCA - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107