miRBase entry: aca-mir-130a-2

Stem-loop aca-mir-130a-2


Accession
MI0018734
Description
Anolis carolinensis aca-mir-130a-2 precursor miRNA
Gene family
MIPF0000034; mir-130


Sequence

cacgaggugucuguccaCUGCCCUUUUUAUGUUGUACUacuagugaacaugcgcaaaaagCAGUGCAAUGUUAAAAGGGCAuuggccagcaaugcuc
...(((.((.(((.(((.(((((((((.((((((((((.((.(((......)))....)).)))))))))).))))))))).))).)))))...)))

Structure
cac   --g  u   u   C         U          a  ---a   aa 
   gag   ug cug cca UGCCCUUUU AUGUUGUACU cu    gug  c
   |||   || ||| ||| ||||||||| |||||||||| ||    |||   
   cuc   ac gac ggu ACGGGAAAA UGUAACGUGA ga    cgc  a
---   gua  -   c   u         U          C  aaaa   gu 


Annotation confidence Not enough data
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Genome context
GL343684.1: 340805-340901 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from aca-mir-130a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-miR-130a-3p

Accession MIMAT0021740
Description Anolis carolinensis aca-miR-130a-3p mature miRNA
Sequence 61 - CAGUGCAAUGUUAAAAGGGCA - 81
Evidence experimental
Illumina [1]

Mature aca-miR-130a-2-5p

Accession MIMAT0021741
Description Anolis carolinensis aca-miR-130a-2-5p mature miRNA
Sequence 18 - CUGCCCUUUUUAUGUUGUACU - 38
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107