Stem-loop aca-mir-138-2

Accession

MI0018747

Description

Anolis carolinensis aca-mir-138-2 precursor miRNA

Gene family

MIPF0000075; mir-138

Sequence

ccauauggcuugguguagcAGCUGGUGUUGUGAAUCAGGCCguugccaaagagagaaCGGCUACUUCACAACACCAGGGuugcccccugcc
......(((..((.(((((..(((((((((((((...(((((((..(.....)..)))))))..))))))))))))).))))).))..)))

Structure

ccauau   uu  u     AG             UCA       gc a 
      ggc  gg guagc  CUGGUGUUGUGAA   GGCCguu  c a
      |||  || |||||  |||||||||||||   |||||||  | a
      ccg  cc cguuG  GACCACAACACUU   UCGGCaa  g g
------   uc  c     -G             -CA       ga a 

Annotation confidence Not enough data

Genome context

chr1: 193168219-193168309 [+]

Mature aca-miR-138-5p

• Accession: MIMAT0021757
• Description: Anolis carolinensis aca-miR-138-5p mature miRNA
• Sequence: 20 - AGCUGGUGUUGUGAAUCAGGCC - 41
• Evidence: experimental ; Illumina [1]

Mature aca-miR-138-2-3p

• Accession: MIMAT0021759
• Description: Anolis carolinensis aca-miR-138-2-3p mature miRNA
• Sequence: 58 - CGGCUACUUCACAACACCAGGG - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107