miRBase entry: aca-mir-143

Stem-loop aca-mir-143


Accession
MI0018753
Description
Anolis carolinensis aca-mir-143 precursor miRNA
Gene family
MIPF0000094; mir-143


Sequence

augucucccagcccaaGGUGCAGUGCUGCAUCUCUGGucaguugugagucUGAGAUGAAGCACUGUAGCUCgggaagggaggaac
...((((((..(((.((.(((((((((.((((((.(((((....))).)).)))))).))))))))).)).)))..))))))...

Structure
aug      ag   a  G         G      U  -   g 
   ucuccc  ccc aG UGCAGUGCU CAUCUC GG uca u
   ||||||  ||| || ||||||||| |||||| || |||  
   ggaggg  ggg UC AUGUCACGA GUAGAG cu agu u
caa      aa   C  G         A      U  g   g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr2: 122658929-122659013 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from aca-mir-143
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-miR-143-5p

Accession MIMAT0021769
Description Anolis carolinensis aca-miR-143-5p mature miRNA
Sequence 17 - GGUGCAGUGCUGCAUCUCUGG - 37
Evidence experimental
Illumina [1]

Mature aca-miR-143-3p

Accession MIMAT0021770
Description Anolis carolinensis aca-miR-143-3p mature miRNA
Sequence 51 - UGAGAUGAAGCACUGUAGCUC - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107