miRBase entry: aca-mir-15a

Stem-loop aca-mir-15a


Accession
MI0018766
Description
Anolis carolinensis aca-mir-15a precursor miRNA
Gene family
MIPF0000006; mir-15


Sequence

gcuuuaaaguacucUAGCAGCACAUCAUGAUUUGUaugucauaguaaauaugCAAGUCAUUAUUUGCUGCUUUagaauuuuaaag
.(((((((((.((..(((((((.((.(((((((((((((........))))))))))))).)).)))))))..)).)))))))))

Structure
g         a  cU       C  C             cau 
 cuuuaaagu cu  AGCAGCA AU AUGAUUUGUaugu   a
 ||||||||| ||  ||||||| || |||||||||||||    
 gaaauuuua ga  UCGUCGU UA UACUGAACguaua   g
-         a  UU       U  U             aau 


Annotation confidence Not enough data
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Genome context
chr3: 13039114-13039198 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from aca-mir-15a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-miR-15a-5p

Accession MIMAT0021792
Description Anolis carolinensis aca-miR-15a-5p mature miRNA
Sequence 15 - UAGCAGCACAUCAUGAUUUGU - 35
Evidence experimental
Illumina [1]

Mature aca-miR-15a-3p

Accession MIMAT0021793
Description Anolis carolinensis aca-miR-15a-3p mature miRNA
Sequence 53 - CAAGUCAUUAUUUGCUGCUUU - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107