Stem-loop aca-mir-16b

Accession

MI0018771

Description

Anolis carolinensis aca-mir-16b precursor miRNA

Gene family

MIPF0000006; mir-15

Sequence

uguccgcccggcucUAGCAGCACGUAAAUACUGGAGucuaggaugauacauuugcccUCCAGUAUUGCUUUGCUGCUUUaaucggguuugauguu
.(((.((((((....(((((((....((((((((((....(((((...)))))...))))))))))....)))))))....))))))..)))...

Structure

--u   -c      cucU       CGUA          ucua     a 
   guc  gcccgg    AGCAGCA    AAUACUGGAG    ggaug  
   |||  ||||||    |||||||    ||||||||||    ||||| u
   uag  ugggcu    UCGUCGU    UUAUGACCUc    uuuac  
uug   uu      aaUU       UUCG          -ccg     a 

Annotation confidence Not enough data

Genome context

GL343761.1: 168379-168473 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-mir-16b

Mature aca-miR-16b-5p

• Accession: MIMAT0021801
• Description: Anolis carolinensis aca-miR-16b-5p mature miRNA
• Sequence: 15 - UAGCAGCACGUAAAUACUGGAG - 36
• Evidence: experimental ; Illumina [1]

Mature aca-miR-16b-3p

• Accession: MIMAT0021802
• Description: Anolis carolinensis aca-miR-16b-3p mature miRNA
• Sequence: 58 - UCCAGUAUUGCUUUGCUGCUUU - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107