miRBase entry: aca-mir-196a-1

Stem-loop aca-mir-196a-1


Accession
MI0018791
Description
Anolis carolinensis aca-mir-196a-1 precursor miRNA
Gene family
MIPF0000031; mir-196


Sequence

aagaacuggucggugauuUAGGUAGUUUCAUGUUGUUGGggcuauggcucucucuuucucgacagcacgaaacugccuucauuacuucaguuucuaaucau
..(((((((..((((((..((((((((((.(((((((((((....(.....)....))))))))))).))))))))))..)))))))))))))........

Structure
------aa       uc      uU          A           cuau g 
        gaacugg  ggugau  AGGUAGUUUC UGUUGUUGGgg    g c
        |||||||  ||||||  |||||||||| |||||||||||    | u
        uuugacu  ucauua  uccgucaaag acgacagcucu    c c
uacuaauc       --      cu          c           uucu u 


Annotation confidence Not enough data
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Genome context
GL343275.1: 1429540-1429640 [+]

Database links

Mature aca-miR-196a

Accession MIMAT0021831
Description Anolis carolinensis aca-miR-196a mature miRNA
Sequence 19 - UAGGUAGUUUCAUGUUGUUGG - 39
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107