miRBase entry: aca-mir-196c

Stem-loop aca-mir-196c


Accession
MI0018793
Description
Anolis carolinensis aca-mir-196c precursor miRNA
Gene family
MIPF0000031; mir-196


Sequence

ccuagaacuguucuguggauUAGGUAGUUUCACGUUGUUGGGaauucauuuuuaacacACAAGAACAUAAAACUACCUGAuuuacuccaguuuau
....((((((....((((((((((((((((...(((.(((...................))).)))...))))))))))))))))..))))))..

Structure
ccua      uucu                CAC   G   GGaauuca 
    gaacug    guggauUAGGUAGUUU   GUU UUG        u
    ||||||    ||||||||||||||||   ||| |||        u
    uuugac    cauuuAGUCCAUCAAA   CAA AAC        u
--ua      --cu                AUA   G   Acacaauu 


Annotation confidence Not enough data
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Genome context
chr6: 75666539-75666633 [-]

Database links

Mature aca-miR-196c-5p

Accession MIMAT0021832
Description Anolis carolinensis aca-miR-196c-5p mature miRNA
Sequence 21 - UAGGUAGUUUCACGUUGUUGGG - 42
Evidence experimental
Illumina [1]

Mature aca-miR-196c-3p

Accession MIMAT0021833
Description Anolis carolinensis aca-miR-196c-3p mature miRNA
Sequence 59 - ACAAGAACAUAAAACUACCUGA - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107