Stem-loop aca-mir-199a-1

Accession

MI0018794

Description

Anolis carolinensis aca-mir-199a-1 precursor miRNA

Gene family

MIPF0000040; mir-199

Sequence

gaccagccccgccuuCCCAGUGUUCAGACUACCUGUucaggaagcuacaaagguguacaguagucugcacauugguuagacugggcuugggugagca
..(((((((.(.((..(((((((.((((((((.(((.((..............)).))))))))))).)))))))..)).).)))).))).......

Structure

-----ga   -    c c  uC       U        C   u  ggaagc 
       cca gccc g cu  CCAGUGU CAGACUAC UGU ca      u
       ||| |||| | ||  ||||||| |||||||| ||| ||       
       ggu cggg c ga  gguuaca gucugaug aca gu      a
acgagug   u    u a  uu       c        -   u  ggaaac 

Annotation confidence Not enough data

Genome context

chr2: 80766220-80766316 [-]

Mature aca-miR-199a-5p

• Accession: MIMAT0021834
• Description: Anolis carolinensis aca-miR-199a-5p mature miRNA
• Sequence: 16 - CCCAGUGUUCAGACUACCUGU - 36
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107