Stem-loop aca-mir-1b

Accession

MI0018801

Description

Anolis carolinensis aca-mir-1b precursor miRNA

Gene family

MIPF0000038; mir-1

Literature search

1 open access papers mention aca-mir-1b
(6 sentences)

Sequence

ugccucccucuugagccuaCAUACUUCUUCAUAUGCCCAUauggagucggccagauuuaUGGAAUGUUAAGAAGUAUGUAucguugggaugggauugga
..((((((((((((...((((((((((((.((((..(((((...((((.....))))))))).)))).))))))))))))...)))))).))))..)).

Structure

ug  --    -      gcc            C    GC     ugg    g 
  cc  uccc ucuuga   uaCAUACUUCUU AUAU  CCAUa   aguc g
  ||  |||| ||||||   |||||||||||| ||||  |||||   |||| c
  gg  aggg aggguu   AUGUAUGAAGAA UGUA  GGUau   uuag c
-a  uu    u      gcu            U    -A     ---    a 

Annotation confidence Not enough data

Genome context

GL343308.1: 91113-91211 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-mir-1b

Mature aca-miR-1b-5p

• Accession: MIMAT0021842
• Description: Anolis carolinensis aca-miR-1b-5p mature miRNA
• Sequence: 20 - CAUACUUCUUCAUAUGCCCAU - 40
• Evidence: experimental ; Illumina [1]

Mature aca-miR-1b-3p

• Accession: MIMAT0021843
• Description: Anolis carolinensis aca-miR-1b-3p mature miRNA
• Sequence: 60 - UGGAAUGUUAAGAAGUAUGUA - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107